J3_4V5H_016

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V5H|1|BB|U|72, 4V5H|1|BB|A|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5H_016 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1227

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5H|1|BB|A|56
4V5H|1|BB|C|57
*
4V5H|1|BB|G|70
4V5H|1|BB|A|71
4V5H|1|BB|U|72
4V5H|1|BB|A|73
4V5H|1|BB|A|74
4V5H|1|BB|G|75
4V5H|1|BB|C|76
*
4V5H|1|BB|G|110
4V5H|1|BB|A|111
4V5H|1|BB|U|112
4V5H|1|BB|U|113
4V5H|1|BB|U|114

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L29

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BT

50S RIBOSOMAL PROTEIN L23