J3_4V5H_025

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4V5H|1|BB|A|2518, 4V5H|1|BB|U|2519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5H_025 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1383

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V5H|1|BB|C|2517
4V5H|1|BB|A|2518
4V5H|1|BB|U|2519
4V5H|1|BB|C|2520
*
4V5H|1|BB|G|2545
4V5H|1|BB|U|2546
4V5H|1|BB|A|2547
*
4V5H|1|BB|U|2561
4V5H|1|BB|U|2562
4V5H|1|BB|U|2563
4V5H|1|BB|A|2564
4V5H|1|BB|A|2565
4V5H|1|BB|A|2566
4V5H|1|BB|G|2567

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L3

Chain BK

50S RIBOSOMAL PROTEIN L14