J3_4V5J_033

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4V5J|1|CA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5J_033 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.158

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V5J|1|CA|C|990
4V5J|1|CA|U|991
4V5J|1|CA|U|992
4V5J|1|CA|G|993
*
4V5J|1|CA|C|1045
4V5J|1|CA|A|1046
4V5J|1|CA|G|1047
*
4V5J|1|CA|C|1210
4V5J|1|CA|U|1211
4V5J|1|CA|U|1212
4V5J|1|CA|A|1213
4V5J|1|CA|C|1214
4V5J|1|CA|G|1215

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CY

PEPTIDE CHAIN RELEASE FACTOR 2