J3_4V5J_040

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V5J|1|DA|G|686, 4V5J|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5J_040 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0961

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5J|1|DA|C|683
4V5J|1|DA|G|684
4V5J|1|DA|A|685
4V5J|1|DA|G|686
4V5J|1|DA|C|687
4V5J|1|DA|U|688
4V5J|1|DA|A|689
*
4V5J|1|DA|U|773
4V5J|1|DA|A|774
4V5J|1|DA|G|775
*
4V5J|1|DA|C|791
4V5J|1|DA|G|792
4V5J|1|DA|A|793
4V5J|1|DA|G|794

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2