J3_4V5K_006

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4V5K|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5K_006 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2583

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V5K|1|AA|C|990
4V5K|1|AA|U|991
4V5K|1|AA|U|992
4V5K|1|AA|G|993
*
4V5K|1|AA|C|1045
4V5K|1|AA|A|1046
4V5K|1|AA|G|1047
*
4V5K|1|AA|C|1210
4V5K|1|AA|U|1211
4V5K|1|AA|U|1212
4V5K|1|AA|A|1213
4V5K|1|AA|C|1214
4V5K|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z