J3_4V5K_027

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUUAAUUC*GAAGAACCUUACC*GGGCGAC

Length

29 nucleotides

Bulged bases

4V5K|1|CA|A|975, 4V5K|1|CA|G|976, 4V5K|1|CA|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5K_027 not in the Motif Atlas

Homologous match to J3_6CZR_020

Geometric discrepancy: 0.1266

The information below is about J3_6CZR_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86907.1

Basepair signature

cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4V5K|1|CA|G|954
4V5K|1|CA|U|955
4V5K|1|CA|U|956
4V5K|1|CA|U|957
4V5K|1|CA|A|958
4V5K|1|CA|A|959
4V5K|1|CA|U|960
4V5K|1|CA|U|961
4V5K|1|CA|C|962
*
4V5K|1|CA|G|973
4V5K|1|CA|A|974
4V5K|1|CA|A|975
4V5K|1|CA|G|976
4V5K|1|CA|A|977
4V5K|1|CA|A|978
4V5K|1|CA|C|979
4V5K|1|CA|C|980
4V5K|1|CA|U|981
4V5K|1|CA|U|982
4V5K|1|CA|A|983
4V5K|1|CA|C|984
4V5K|1|CA|C|985
*
4V5K|1|CA|G|1220
4V5K|1|CA|G|1221
4V5K|1|CA|G|1222
4V5K|1|CA|C|1223
4V5K|1|CA|G|1224
4V5K|1|CA|A|1225
4V5K|1|CA|C|1226

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CM

30S RIBOSOMAL PROTEIN S13

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CS

30S RIBOSOMAL PROTEIN S19