J3_4V5K_035

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V5K|1|DA|G|686, 4V5K|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5K_035 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0915

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V5K|1|DA|C|683
4V5K|1|DA|G|684
4V5K|1|DA|A|685
4V5K|1|DA|G|686
4V5K|1|DA|C|687
4V5K|1|DA|U|688
4V5K|1|DA|A|689
*
4V5K|1|DA|U|773
4V5K|1|DA|A|774
4V5K|1|DA|G|775
*
4V5K|1|DA|C|791
4V5K|1|DA|G|792
4V5K|1|DA|A|793
4V5K|1|DA|G|794

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2