J3_4V5K_053
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V5K|1|BA|A|2388, 4V5K|1|BA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5K_053 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1133
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V5K|1|BA|G|2282
4V5K|1|BA|C|2283
4V5K|1|BA|C|2284
*
4V5K|1|BA|G|2384
4V5K|1|BA|C|2385
4V5K|1|BA|C|2386
4V5K|1|BA|U|2387
4V5K|1|BA|A|2388
4V5K|1|BA|G|2389
4V5K|1|BA|U|2390
4V5K|1|BA|G|2391
4V5K|1|BA|A|2392
4V5K|1|BA|A|2393
4V5K|1|BA|C|2394
4V5K|1|BA|C|2395
*
4V5K|1|BA|G|2421
4V5K|1|BA|A|2422
4V5K|1|BA|U|2423
4V5K|1|BA|C|2424
4V5K|1|BA|A|2425
4V5K|1|BA|A|2426
4V5K|1|BA|C|2427
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain B8
- 50S RIBOSOMAL PROTEIN L35
- Chain BP
- 50S RIBOSOMAL PROTEIN L15
Coloring options: