3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5M_002 not in the Motif Atlas
Geometric match to J3_6CZR_016
Geometric discrepancy: 0.1961
The information below is about J3_6CZR_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.4
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
6

Unit IDs

4V5M|1|AA|C|586
4V5M|1|AA|G|587
4V5M|1|AA|G|588
*
4V5M|1|AA|C|651
4V5M|1|AA|U|652
4V5M|1|AA|A|653
4V5M|1|AA|G|654
*
4V5M|1|AA|C|754
4V5M|1|AA|G|755

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AH
30S RIBOSOMAL PROTEIN S8
Chain AL
30S RIBOSOMAL PROTEIN S12
Chain AO
30S RIBOSOMAL PROTEIN S15
Chain AQ
30S RIBOSOMAL PROTEIN S17

Coloring options:


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