3D structure

PDB id
4V5M (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.8 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4V5M|1|AA|A|975, 4V5M|1|AA|G|976, 4V5M|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5M_007 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.088
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V5M|1|AA|U|955
4V5M|1|AA|U|956
4V5M|1|AA|U|957
4V5M|1|AA|A|958
4V5M|1|AA|A|959
4V5M|1|AA|U|960
4V5M|1|AA|U|961
4V5M|1|AA|C|962
*
4V5M|1|AA|G|973
4V5M|1|AA|A|974
4V5M|1|AA|A|975
4V5M|1|AA|G|976
4V5M|1|AA|A|977
4V5M|1|AA|A|978
4V5M|1|AA|C|979
4V5M|1|AA|C|980
4V5M|1|AA|U|981
4V5M|1|AA|U|982
4V5M|1|AA|A|983
4V5M|1|AA|C|984
*
4V5M|1|AA|G|1221
4V5M|1|AA|G|1222
4V5M|1|AA|C|1223
4V5M|1|AA|G|1224
4V5M|1|AA|A|1225

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AI
30S RIBOSOMAL PROTEIN S9
Chain AJ
30S RIBOSOMAL PROTEIN S10
Chain AM
30S RIBOSOMAL PROTEIN S13
Chain AN
30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain AS
30S RIBOSOMAL PROTEIN S19

Coloring options:


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