J3_4V5O_004
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- AUUA*UAACUAAUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V5O|1|AA|A|912
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1461
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V5O|1|AA|A|859
4V5O|1|AA|U|860
4V5O|1|AA|U|861
4V5O|1|AA|A|862
*
4V5O|1|AA|U|906
4V5O|1|AA|A|907
4V5O|1|AA|A|908
4V5O|1|AA|C|909
4V5O|1|AA|U|910
4V5O|1|AA|A|911
4V5O|1|AA|A|912
4V5O|1|AA|U|913
4V5O|1|AA|G|914
*
4V5O|1|AA|C|921
4V5O|1|AA|A|922
4V5O|1|AA|U|923
4V5O|1|AA|U|924
4V5O|1|AA|U|925
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A4
- 40S RIBOSOMAL PROTEIN S3A
- Chain A5
- RIBOSOMAL PROTEIN S26E CONTAINING PROTEIN
- Chain AK
- RPS14E
- Chain AO
- RPS13E
Coloring options: