J3_4V5O_021
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4V5O|1|BA|G|1171, 4V5O|1|BA|G|1173, 4V5O|1|BA|A|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5O_021 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1499
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V5O|1|BA|C|1152
4V5O|1|BA|U|1153
4V5O|1|BA|U|1154
4V5O|1|BA|A|1155
4V5O|1|BA|A|1156
4V5O|1|BA|U|1157
4V5O|1|BA|U|1158
4V5O|1|BA|U|1159
*
4V5O|1|BA|G|1170
4V5O|1|BA|G|1171
4V5O|1|BA|G|1172
4V5O|1|BA|G|1173
4V5O|1|BA|A|1174
4V5O|1|BA|A|1175
4V5O|1|BA|A|1176
4V5O|1|BA|C|1177
4V5O|1|BA|U|1178
4V5O|1|BA|C|1179
4V5O|1|BA|A|1180
4V5O|1|BA|C|1181
*
4V5O|1|BA|G|1425
4V5O|1|BA|G|1426
4V5O|1|BA|C|1427
4V5O|1|BA|C|1428
4V5O|1|BA|G|1429
Current chains
- Chain BA
- 18S RRNA
Nearby chains
- Chain B9
- RPS31E
- Chain BJ
- RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
- Chain BM
- RPS18E
- Chain BN
- RPS29E
- Chain BS
- RPS15E
Coloring options: