J3_4V5O_027

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UAGAUAUUAGACCAAUC*GAUUGAG*CAAA

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5O|1|AA|U|207
4V5O|1|AA|A|208
4V5O|1|AA|G|209
4V5O|1|AA|A|210
4V5O|1|AA|U|211
4V5O|1|AA|A|212
4V5O|1|AA|U|213
4V5O|1|AA|U|214
4V5O|1|AA|A|215
4V5O|1|AA|G|216
4V5O|1|AA|A|217
4V5O|1|AA|C|218
4V5O|1|AA|C|219
4V5O|1|AA|A|220
4V5O|1|AA|A|221
4V5O|1|AA|U|222
4V5O|1|AA|C|223
*
4V5O|1|AA|G|234
4V5O|1|AA|A|235
4V5O|1|AA|U|236
4V5O|1|AA|U|237
4V5O|1|AA|G|238
4V5O|1|AA|A|239
4V5O|1|AA|G|240
*
4V5O|1|AA|C|247
4V5O|1|AA|A|248
4V5O|1|AA|A|249
4V5O|1|AA|A|250

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN

Chain AW

40S RIBOSOMAL PROTEIN S4

Chain AY

RPS6E