J3_4V5P_028
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V5P|1|CA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5P_028 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1084
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V5P|1|CA|U|672
4V5P|1|CA|G|673
*
4V5P|1|CA|C|717
4V5P|1|CA|G|718
4V5P|1|CA|C|719
4V5P|1|CA|C|720
4V5P|1|CA|G|721
4V5P|1|CA|A|722
4V5P|1|CA|U|723
4V5P|1|CA|G|724
4V5P|1|CA|G|725
*
4V5P|1|CA|C|732
4V5P|1|CA|A|733
4V5P|1|CA|G|734
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CF
- 30S RIBOSOMAL PROTEIN S6
- Chain CK
- 30S RIBOSOMAL PROTEIN S11
- Chain CO
- 30S RIBOSOMAL PROTEIN S15
- Chain CR
- 30S RIBOSOMAL PROTEIN S18
- Chain CX
- MRNA
Coloring options: