J3_4V5P_031
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5P_031 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0842
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5P|1|CA|U|943
4V5P|1|CA|G|944
4V5P|1|CA|G|945
4V5P|1|CA|A|946
*
4V5P|1|CA|U|1235
4V5P|1|CA|A|1236
4V5P|1|CA|C|1237
*
4V5P|1|CA|G|1337
4V5P|1|CA|G|1338
4V5P|1|CA|A|1339
4V5P|1|CA|A|1340
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CU
- 30S RIBOSOMAL PROTEIN THX
- Chain CV
- Transfer RNA; tRNA
- Chain CW
- Transfer RNA; tRNA
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