J3_4V5P_042

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5P_042 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1119

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V5P|1|DA|C|698
4V5P|1|DA|A|699
4V5P|1|DA|G|700
*
4V5P|1|DA|C|732
4V5P|1|DA|G|733
4V5P|1|DA|A|734
4V5P|1|DA|A|735
4V5P|1|DA|C|736
*
4V5P|1|DA|G|760
4V5P|1|DA|A|761
4V5P|1|DA|U|762
4V5P|1|DA|G|763

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L2