J3_4V5P_056
3D structure
- PDB id
- 4V5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 4V5P|1|BA|C|34, 4V5P|1|BA|U|448, 4V5P|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5P_056 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.07
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
4V5P|1|BA|C|32
4V5P|1|BA|U|33
4V5P|1|BA|C|34
4V5P|1|BA|G|35
*
4V5P|1|BA|C|445
4V5P|1|BA|G|446
4V5P|1|BA|A|447
4V5P|1|BA|U|448
4V5P|1|BA|A|449
4V5P|1|BA|G|450
4V5P|1|BA|C|451
4V5P|1|BA|G|452
4V5P|1|BA|C|453
4V5P|1|BA|A|454
4V5P|1|BA|C|455
4V5P|1|BA|C|456
4V5P|1|BA|A|457
4V5P|1|BA|G|458
4V5P|1|BA|U|459
4V5P|1|BA|A|460
4V5P|1|BA|C|461
*
4V5P|1|BA|G|468
4V5P|1|BA|G|469
4V5P|1|BA|A|470
4V5P|1|BA|A|471
4V5P|1|BA|A|472
4V5P|1|BA|G|473
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 50S RIBOSOMAL PROTEIN L34
- Chain BF
- 50S RIBOSOMAL PROTEIN L4
- Chain BU
- 50S RIBOSOMAL PROTEIN L20
- Chain BX
- 50S RIBOSOMAL PROTEIN L23
Coloring options: