3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
4V5Q|1|CA|U|1240, 4V5Q|1|CA|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5Q_038 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1088
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V5Q|1|CA|C|1237
4V5Q|1|CA|A|1238
4V5Q|1|CA|A|1239
4V5Q|1|CA|U|1240
4V5Q|1|CA|G|1241
*
4V5Q|1|CA|C|1296
4V5Q|1|CA|C|1297
4V5Q|1|CA|C|1298
4V5Q|1|CA|A|1299
4V5Q|1|CA|G|1300
4V5Q|1|CA|U|1301
4V5Q|1|CA|U|1302
4V5Q|1|CA|C|1303
*
4V5Q|1|CA|G|1334
4V5Q|1|CA|C|1335
4V5Q|1|CA|C|1336
4V5Q|1|CA|G|1337

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CG
30S RIBOSOMAL PROTEIN S7
Chain CM
30S RIBOSOMAL PROTEIN S13
Chain CU
30S RIBOSOMAL PROTEIN THX
Chain CW
Transfer RNA; tRNA

Coloring options:


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