J3_4V5Q_038
3D structure
- PDB id
- 4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 4V5Q|1|CA|U|1240, 4V5Q|1|CA|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5Q_038 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1088
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V5Q|1|CA|C|1237
4V5Q|1|CA|A|1238
4V5Q|1|CA|A|1239
4V5Q|1|CA|U|1240
4V5Q|1|CA|G|1241
*
4V5Q|1|CA|C|1296
4V5Q|1|CA|C|1297
4V5Q|1|CA|C|1298
4V5Q|1|CA|A|1299
4V5Q|1|CA|G|1300
4V5Q|1|CA|U|1301
4V5Q|1|CA|U|1302
4V5Q|1|CA|C|1303
*
4V5Q|1|CA|G|1334
4V5Q|1|CA|C|1335
4V5Q|1|CA|C|1336
4V5Q|1|CA|G|1337
Current chains
- Chain CA
- 16S RRNA
Nearby chains
- Chain CG
- 30S RIBOSOMAL PROTEIN S7
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CU
- 30S RIBOSOMAL PROTEIN THX
- Chain CW
- Transfer RNA; tRNA
Coloring options: