3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
4V5Q|1|CA|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V5Q_065 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.0872
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V5Q|1|CA|C|1116
4V5Q|1|CA|G|1117
4V5Q|1|CA|C|1118
*
4V5Q|1|CA|G|1155
4V5Q|1|CA|G|1156
4V5Q|1|CA|A|1157
4V5Q|1|CA|C|1158
4V5Q|1|CA|U|1159
4V5Q|1|CA|G|1160
4V5Q|1|CA|C|1161
*
4V5Q|1|CA|G|1175
4V5Q|1|CA|A|1176
4V5Q|1|CA|G|1177
4V5Q|1|CA|G|1178
4V5Q|1|CA|A|1179
4V5Q|1|CA|A|1180
4V5Q|1|CA|G|1181
4V5Q|1|CA|G|1182
4V5Q|1|CA|A|1183
4V5Q|1|CA|G|1184

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CB
30S RIBOSOMAL PROTEIN S2
Chain CG
30S RIBOSOMAL PROTEIN S7
Chain CI
30S RIBOSOMAL PROTEIN S9
Chain CJ
30S RIBOSOMAL PROTEIN S10
Chain CN
30S RIBOSOMAL PROTEIN S14

Coloring options:


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