J3_4V5R_051
3D structure
- PDB id
- 4V5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4V5R|1|AA|C|48, 4V5R|1|AA|A|50, 4V5R|1|AA|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5R_051 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0612
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V5R|1|AA|G|46
4V5R|1|AA|C|47
4V5R|1|AA|C|48
4V5R|1|AA|U|49
4V5R|1|AA|A|50
4V5R|1|AA|A|51
4V5R|1|AA|G|52
*
4V5R|1|AA|U|359
4V5R|1|AA|A|360
4V5R|1|AA|G|361
4V5R|1|AA|G|362
4V5R|1|AA|A|363
4V5R|1|AA|A|364
4V5R|1|AA|U|365
4V5R|1|AA|C|366
4V5R|1|AA|U|367
*
4V5R|1|AA|A|393
4V5R|1|AA|G|394
4V5R|1|AA|C|395
Current chains
- Chain AA
- 16S RRNA
Nearby chains
- Chain AL
- 30S RIBOSOMAL PROTEIN S12
- Chain AP
- 30S RIBOSOMAL PROTEIN S16
- Chain AY
- Transfer RNA; tRNA
- Chain AZ
- ELONGATION FACTOR TU
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