J3_4V5S_064

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V5S|1|DA|U|504, 4V5S|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5S_064 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2429

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V5S|1|DA|G|30
4V5S|1|DA|C|31
*
4V5S|1|DA|G|474
4V5S|1|DA|U|475
4V5S|1|DA|G|476
4V5S|1|DA|A|477
4V5S|1|DA|A|478
4V5S|1|DA|A|479
4V5S|1|DA|A|480
4V5S|1|DA|G|481
4V5S|1|DA|A|482
4V5S|1|DA|A|483
4V5S|1|DA|C|484
*
4V5S|1|DA|G|496
4V5S|1|DA|A|497
4V5S|1|DA|G|498
4V5S|1|DA|U|499
4V5S|1|DA|G|500
4V5S|1|DA|A|501
4V5S|1|DA|A|502
4V5S|1|DA|A|503
4V5S|1|DA|U|504
4V5S|1|DA|A|505
4V5S|1|DA|G|506
4V5S|1|DA|A|507
4V5S|1|DA|G|508
4V5S|1|DA|C|509
4V5S|1|DA|C|510

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24