J3_4V5Y_052
3D structure
- PDB id
- 4V5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.45 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 4V5Y|1|DB|U|2833, 4V5Y|1|DB|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V5Y_052 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1751
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V5Y|1|DB|G|2812
4V5Y|1|DB|A|2813
4V5Y|1|DB|A|2814
4V5Y|1|DB|C|2815
*
4V5Y|1|DB|G|2831
4V5Y|1|DB|U|2832
4V5Y|1|DB|U|2833
4V5Y|1|DB|G|2834
4V5Y|1|DB|A|2835
4V5Y|1|DB|U|2836
*
4V5Y|1|DB|A|2882
4V5Y|1|DB|A|2883
4V5Y|1|DB|U|2884
4V5Y|1|DB|G|2885
4V5Y|1|DB|A|2886
4V5Y|1|DB|A|2887
4V5Y|1|DB|C|2888
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DN
- 50S ribosomal protein L17
- Chain DS
- 50S ribosomal protein L22
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