J3_4V5Y_057

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V5Y|1|BB|A|504, 4V5Y|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V5Y_057 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.081

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5Y|1|BB|G|30
4V5Y|1|BB|C|31
*
4V5Y|1|BB|G|474
4V5Y|1|BB|C|475
4V5Y|1|BB|G|476
4V5Y|1|BB|A|477
4V5Y|1|BB|A|478
4V5Y|1|BB|A|479
4V5Y|1|BB|A|480
4V5Y|1|BB|G|481
4V5Y|1|BB|A|482
4V5Y|1|BB|A|483
4V5Y|1|BB|C|484
*
4V5Y|1|BB|G|496
4V5Y|1|BB|A|497
4V5Y|1|BB|G|498
4V5Y|1|BB|U|499
4V5Y|1|BB|G|500
4V5Y|1|BB|A|501
4V5Y|1|BB|A|502
4V5Y|1|BB|A|503
4V5Y|1|BB|A|504
4V5Y|1|BB|A|505
4V5Y|1|BB|G|506
4V5Y|1|BB|A|507
4V5Y|1|BB|A|508
4V5Y|1|BB|C|509
4V5Y|1|BB|C|510

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24