J3_4V61_004

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUUCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_004 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.101

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.2

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

4V61|1|AA|C|885
4V61|1|AA|A|886
4V61|1|AA|A|887
4V61|1|AA|G|888
*
4V61|1|AA|C|1292
4V61|1|AA|U|1293
4V61|1|AA|A|1294
4V61|1|AA|G|1295
4V61|1|AA|U|1296
4V61|1|AA|A|1297
4V61|1|AA|A|1298
*
4V61|1|AA|U|1321
4V61|1|AA|G|1322
4V61|1|AA|A|1323
4V61|1|AA|A|1324
4V61|1|AA|U|1325
4V61|1|AA|U|1326
4V61|1|AA|C|1327
4V61|1|AA|G|1328

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

Ribosomal Protein S7

Chain AI

Ribosomal Protein S9