J3_4V61_007

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

4V61|1|AA|U|1160, 4V61|1|AA|U|1162

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_007 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.182

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V61|1|AA|C|939
4V61|1|AA|U|940
4V61|1|AA|U|941
4V61|1|AA|G|942
4V61|1|AA|A|943
4V61|1|AA|C|944
4V61|1|AA|A|945
4V61|1|AA|U|946
*
4V61|1|AA|A|993
4V61|1|AA|C|994
4V61|1|AA|A|995
4V61|1|AA|G|996
*
4V61|1|AA|C|1158
4V61|1|AA|U|1159
4V61|1|AA|U|1160
4V61|1|AA|A|1161
4V61|1|AA|U|1162
4V61|1|AA|G|1163

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Ribosomal Protein S3

Chain AN

Ribosomal Protein S14