J3_4V61_011
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- CGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 4V61|1|AA|U|1131
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V61_011 not in the Motif Atlas
- Geometric match to J3_5J7L_054
- Geometric discrepancy: 0.1308
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V61|1|AA|C|1065
4V61|1|AA|G|1066
4V61|1|AA|U|1067
*
4V61|1|AA|A|1103
4V61|1|AA|G|1104
4V61|1|AA|A|1105
4V61|1|AA|C|1106
4V61|1|AA|U|1107
4V61|1|AA|G|1108
4V61|1|AA|C|1109
*
4V61|1|AA|G|1123
4V61|1|AA|A|1124
4V61|1|AA|G|1125
4V61|1|AA|G|1126
4V61|1|AA|A|1127
4V61|1|AA|A|1128
4V61|1|AA|G|1129
4V61|1|AA|G|1130
4V61|1|AA|U|1131
4V61|1|AA|G|1132
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AB
- Ribosomal Protein S2
- Chain AG
- Ribosomal Protein S7
- Chain AI
- Ribosomal Protein S9
- Chain AJ
- Ribosomal Protein S10
- Chain AN
- Ribosomal Protein S14
Coloring options: