J3_4V61_016

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGAAAA*UAG*CUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V61_016 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.2983

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V61|1|BA|C|1319
4V61|1|BA|G|1320
4V61|1|BA|A|1321
4V61|1|BA|A|1322
4V61|1|BA|A|1323
4V61|1|BA|A|1324
*
4V61|1|BA|U|1661
4V61|1|BA|A|1662
4V61|1|BA|G|1663
*
4V61|1|BA|C|1675
4V61|1|BA|U|1676
4V61|1|BA|A|1677
4V61|1|BA|G|1678

Current chains

Chain BA

23S rRNA

Nearby chains