J3_4V61_022

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCUUAAC*GGGGAAUUUUC*GAGC

Length

22 nucleotides

Bulged bases

4V61|1|AA|U|49, 4V61|1|AA|A|51, 4V61|1|AA|A|52, 4V61|1|AA|U|339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|AA|G|47
4V61|1|AA|C|48
4V61|1|AA|U|49
4V61|1|AA|U|50
4V61|1|AA|A|51
4V61|1|AA|A|52
4V61|1|AA|C|53
*
4V61|1|AA|G|330
4V61|1|AA|G|331
4V61|1|AA|G|332
4V61|1|AA|G|333
4V61|1|AA|A|334
4V61|1|AA|A|335
4V61|1|AA|U|336
4V61|1|AA|U|337
4V61|1|AA|U|338
4V61|1|AA|U|339
4V61|1|AA|C|340
*
4V61|1|AA|G|363
4V61|1|AA|A|364
4V61|1|AA|G|365
4V61|1|AA|C|366

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

Ribosomal Protein S12

Chain AP

Ribosomal Protein S16