J3_4V61_023

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGGAAUU*AAGAACACCAACGG*CAC

Length

24 nucleotides

Bulged bases

4V61|1|AA|C|671

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|AA|G|620
4V61|1|AA|G|621
4V61|1|AA|G|622
4V61|1|AA|A|623
4V61|1|AA|A|624
4V61|1|AA|U|625
4V61|1|AA|U|626
*
4V61|1|AA|A|660
4V61|1|AA|A|661
4V61|1|AA|G|662
4V61|1|AA|A|663
4V61|1|AA|A|664
4V61|1|AA|C|665
4V61|1|AA|A|666
4V61|1|AA|C|667
4V61|1|AA|C|668
4V61|1|AA|A|669
4V61|1|AA|A|670
4V61|1|AA|C|671
4V61|1|AA|G|672
4V61|1|AA|G|673
*
4V61|1|AA|C|680
4V61|1|AA|A|681
4V61|1|AA|C|682

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AF

Ribosomal Protein S6

Chain AK

Ribosomal Protein S11

Chain AR

Ribosomal Protein S18

Chain AU

Ribosomal Protein S21

Chain BE

Ribosomal Protein L2