J3_4V61_031

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUUCGCCAC*GUUGG*CCAUUAAAGCGGUACG

Length

30 nucleotides

Bulged bases

4V61|1|BA|C|2535, 4V61|1|BA|A|2536, 4V61|1|BA|A|2589, 4V61|1|BA|C|2590

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|C|2529
4V61|1|BA|U|2530
4V61|1|BA|U|2531
4V61|1|BA|C|2532
4V61|1|BA|G|2533
4V61|1|BA|C|2534
4V61|1|BA|C|2535
4V61|1|BA|A|2536
4V61|1|BA|C|2537
*
4V61|1|BA|G|2562
4V61|1|BA|U|2563
4V61|1|BA|U|2564
4V61|1|BA|G|2565
4V61|1|BA|G|2566
*
4V61|1|BA|C|2576
4V61|1|BA|C|2577
4V61|1|BA|A|2578
4V61|1|BA|U|2579
4V61|1|BA|U|2580
4V61|1|BA|A|2581
4V61|1|BA|A|2582
4V61|1|BA|A|2583
4V61|1|BA|G|2584
4V61|1|BA|C|2585
4V61|1|BA|G|2586
4V61|1|BA|G|2587
4V61|1|BA|U|2588
4V61|1|BA|A|2589
4V61|1|BA|C|2590
4V61|1|BA|G|2591

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

Ribosomal Protein L3

Chain BL

Ribosomal Protein L13

Chain BM

Ribosomal Protein L14