J3_4V61_032

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUCCUAGG*CGGUGACGAUAC*GAAAAAUAGCUCGAC

Length

35 nucleotides

Bulged bases

4V61|1|BB|C|12, 4V61|1|BB|A|14, 4V61|1|BB|C|109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BB|G|9
4V61|1|BB|U|10
4V61|1|BB|C|11
4V61|1|BB|C|12
4V61|1|BB|U|13
4V61|1|BB|A|14
4V61|1|BB|G|15
4V61|1|BB|G|16
*
4V61|1|BB|C|68
4V61|1|BB|G|69
4V61|1|BB|G|70
4V61|1|BB|U|71
4V61|1|BB|G|72
4V61|1|BB|A|73
4V61|1|BB|C|74
4V61|1|BB|G|75
4V61|1|BB|A|76
4V61|1|BB|U|77
4V61|1|BB|A|78
4V61|1|BB|C|79
*
4V61|1|BB|G|98
4V61|1|BB|A|99
4V61|1|BB|A|100
4V61|1|BB|A|101
4V61|1|BB|A|102
4V61|1|BB|A|103
4V61|1|BB|U|104
4V61|1|BB|A|105
4V61|1|BB|G|106
4V61|1|BB|C|107
4V61|1|BB|U|108
4V61|1|BB|C|109
4V61|1|BB|G|110
4V61|1|BB|A|111
4V61|1|BB|C|112

Current chains

Chain BB

5S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

Ribosomal Protein L16

Chain BQ

Ribosomal Protein L18

Chain BX

Ribosomal Protein L27