J3_4V61_036

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UGAUCUAUC*GUUAGGG*CACUCGAA

Length

24 nucleotides

Bulged bases

4V61|1|BA|U|697, 4V61|1|BA|C|800, 4V61|1|BA|G|803

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|U|694
4V61|1|BA|G|695
4V61|1|BA|A|696
4V61|1|BA|U|697
4V61|1|BA|C|698
4V61|1|BA|U|699
4V61|1|BA|A|700
4V61|1|BA|U|701
4V61|1|BA|C|702
*
4V61|1|BA|G|782
4V61|1|BA|U|783
4V61|1|BA|U|784
4V61|1|BA|A|785
4V61|1|BA|G|786
4V61|1|BA|G|787
4V61|1|BA|G|788
*
4V61|1|BA|C|798
4V61|1|BA|A|799
4V61|1|BA|C|800
4V61|1|BA|U|801
4V61|1|BA|C|802
4V61|1|BA|G|803
4V61|1|BA|A|804
4V61|1|BA|A|805

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

Ribosomal Protein L34

Chain BE

Ribosomal Protein L2

Chain BU

Ribosomal Protein L22