J3_4V63_022

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V63|1|BA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V63_022 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1531

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V63|1|BA|G|1344
4V63|1|BA|C|1345
4V63|1|BA|G|1346
4V63|1|BA|G|1347
4V63|1|BA|G|1348
4V63|1|BA|A|1349
4V63|1|BA|C|1350
*
4V63|1|BA|G|1381
4V63|1|BA|G|1382
4V63|1|BA|C|1383
4V63|1|BA|A|1384
4V63|1|BA|G|1385
*
4V63|1|BA|C|1402
4V63|1|BA|C|1403

Current chains

Chain BA

23S RRNA

Nearby chains

Chain BX

50S ribosomal protein L23