J3_4V63_067

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V63|1|CA|C|48, 4V63|1|CA|A|50, 4V63|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V63_067 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1025

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V63|1|CA|G|46
4V63|1|CA|C|47
4V63|1|CA|C|48
4V63|1|CA|U|49
4V63|1|CA|A|50
4V63|1|CA|A|51
4V63|1|CA|G|52
*
4V63|1|CA|U|359
4V63|1|CA|A|360
4V63|1|CA|G|361
4V63|1|CA|G|362
4V63|1|CA|A|363
4V63|1|CA|A|364
4V63|1|CA|U|365
4V63|1|CA|C|366
4V63|1|CA|U|367
*
4V63|1|CA|A|393
4V63|1|CA|G|394
4V63|1|CA|C|395

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CP

30S ribosomal protein S16