3D structure

PDB id
4V64 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases (A, C, G, U)
723U
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V64_029 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1066
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.2
Basepair signature
cWW-F-cWW-F-F-tWW-F-cWW-F
Number of instances in this motif group
4

Unit IDs

4V64|1|CA|U|672
4V64|1|CA|A|673
*
4V64|1|CA|U|717
4V64|1|CA|A|718
4V64|1|CA|C|719
4V64|1|CA|C|720
4V64|1|CA|G|721
4V64|1|CA|G|722
4V64|1|CA|U|723
4V64|1|CA|G|724
4V64|1|CA|G|725
*
4V64|1|CA|C|732
4V64|1|CA|G|733
4V64|1|CA|G|734

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CF
30S ribosomal protein S6
Chain CK
30S ribosomal protein S11
Chain CO
30S ribosomal protein S15
Chain CR
30S ribosomal protein S18
Chain CU
30S ribosomal protein S21

Coloring options:


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