J3_4V65_001

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V65_001 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.4731

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V65|1|A1|G|46
4V65|1|A1|C|47
*
4V65|1|A1|G|361
4V65|1|A1|G|362
4V65|1|A1|A|363
4V65|1|A1|A|364
4V65|1|A1|U|365
4V65|1|A1|A|366
4V65|1|A1|U|367
*
4V65|1|A1|A|393
4V65|1|A1|G|394
4V65|1|A1|C|395

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain AI

30S ribosomal protein S16