J3_4V65_008

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUG*CCUGAAG*CGUGAG

Length

16 nucleotides

Bulged bases

4V65|1|BB|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|2789
4V65|1|BB|U|2790
4V65|1|BB|G|2791
*
4V65|1|BB|C|2805
4V65|1|BB|C|2806
4V65|1|BB|U|2807
4V65|1|BB|G|2808
4V65|1|BB|A|2809
4V65|1|BB|A|2810
4V65|1|BB|G|2811
*
4V65|1|BB|C|2889
4V65|1|BB|G|2890
4V65|1|BB|U|2891
4V65|1|BB|G|2892
4V65|1|BB|A|2893
4V65|1|BB|G|2894

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L22

Chain BT

50S ribosomal protein L32

Chain BY

50S ribosomal protein L3