J3_4V65_009
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAUGGCUCAGAUUGAA*UUAAUCGGAAUUACUGG*CUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUG
- Length
- 68 nucleotides
- Bulged bases
- 4V65|1|A1|A|26, 4V65|1|A1|G|27, 4V65|1|A1|G|31, 4V65|1|A1|A|553, 4V65|1|A1|A|554, 4V65|1|A1|A|560, 4V65|1|A1|U|561, 4V65|1|A1|C|564, 4V65|1|A1|U|565, 4V65|1|A1|G|566, 4V65|1|A1|C|893
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V65|1|A1|C|18
4V65|1|A1|A|19
4V65|1|A1|U|20
4V65|1|A1|G|21
4V65|1|A1|G|22
4V65|1|A1|C|23
4V65|1|A1|U|24
4V65|1|A1|C|25
4V65|1|A1|A|26
4V65|1|A1|G|27
4V65|1|A1|A|28
4V65|1|A1|U|29
4V65|1|A1|U|30
4V65|1|A1|G|31
4V65|1|A1|A|32
4V65|1|A1|A|33
*
4V65|1|A1|U|551
4V65|1|A1|U|552
4V65|1|A1|A|553
4V65|1|A1|A|554
4V65|1|A1|U|555
4V65|1|A1|C|556
4V65|1|A1|G|557
4V65|1|A1|G|558
4V65|1|A1|A|559
4V65|1|A1|A|560
4V65|1|A1|U|561
4V65|1|A1|U|562
4V65|1|A1|A|563
4V65|1|A1|C|564
4V65|1|A1|U|565
4V65|1|A1|G|566
4V65|1|A1|G|567
*
4V65|1|A1|C|883
4V65|1|A1|U|884
4V65|1|A1|G|885
4V65|1|A1|G|886
4V65|1|A1|G|887
4V65|1|A1|G|888
4V65|1|A1|A|889
4V65|1|A1|G|890
4V65|1|A1|U|891
4V65|1|A1|A|892
4V65|1|A1|C|893
4V65|1|A1|G|894
4V65|1|A1|G|895
4V65|1|A1|C|896
4V65|1|A1|C|897
4V65|1|A1|G|898
4V65|1|A1|C|899
4V65|1|A1|A|900
4V65|1|A1|A|901
4V65|1|A1|G|902
4V65|1|A1|G|903
4V65|1|A1|U|904
4V65|1|A1|U|905
4V65|1|A1|A|906
4V65|1|A1|A|907
4V65|1|A1|A|908
4V65|1|A1|A|909
4V65|1|A1|C|910
4V65|1|A1|U|911
4V65|1|A1|C|912
4V65|1|A1|A|913
4V65|1|A1|A|914
4V65|1|A1|A|915
4V65|1|A1|U|916
4V65|1|A1|G|917
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain AD
- 30S ribosomal protein S12
- Chain AJ
- 30S ribosomal protein S17
- Chain AR
- 30S ribosomal protein S4
- Chain AS
- 30S ribosomal protein S5
- Chain AV
- 30S ribosomal protein S8
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
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