J3_4V65_021

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGGUGGAUGCCCUG*CGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAG*CCUGAAACCG

Length

61 nucleotides

Bulged bases

4V65|1|BB|G|24, 4V65|1|BB|G|30, 4V65|1|BB|U|34, 4V65|1|BB|U|448, 4V65|1|BB|C|455, 4V65|1|BB|C|456, 4V65|1|BB|U|464, 4V65|1|BB|G|465, 4V65|1|BB|A|466, 4V65|1|BB|A|477, 4V65|1|BB|C|510, 4V65|1|BB|U|511, 4V65|1|BB|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|22
4V65|1|BB|G|23
4V65|1|BB|G|24
4V65|1|BB|U|25
4V65|1|BB|G|26
4V65|1|BB|G|27
4V65|1|BB|A|28
4V65|1|BB|U|29
4V65|1|BB|G|30
4V65|1|BB|C|31
4V65|1|BB|C|32
4V65|1|BB|C|33
4V65|1|BB|U|34
4V65|1|BB|G|35
*
4V65|1|BB|C|445
4V65|1|BB|G|446
4V65|1|BB|A|447
4V65|1|BB|U|448
4V65|1|BB|A|449
4V65|1|BB|G|450
4V65|1|BB|U|451
4V65|1|BB|G|452
4V65|1|BB|A|453
4V65|1|BB|A|454
4V65|1|BB|C|455
4V65|1|BB|C|456
4V65|1|BB|A|457
4V65|1|BB|G|458
4V65|1|BB|U|459
4V65|1|BB|A|460
4V65|1|BB|C|461
4V65|1|BB|C|462
4V65|1|BB|G|463
4V65|1|BB|U|464
4V65|1|BB|G|465
4V65|1|BB|A|466
4V65|1|BB|G|467
4V65|1|BB|G|468
4V65|1|BB|G|469
4V65|1|BB|A|470
4V65|1|BB|A|471
4V65|1|BB|A|472
4V65|1|BB|G|473
4V65|1|BB|G|474
4V65|1|BB|C|475
4V65|1|BB|G|476
4V65|1|BB|A|477
4V65|1|BB|A|478
4V65|1|BB|A|479
4V65|1|BB|A|480
4V65|1|BB|G|481
*
4V65|1|BB|C|509
4V65|1|BB|C|510
4V65|1|BB|U|511
4V65|1|BB|G|512
4V65|1|BB|A|513
4V65|1|BB|A|514
4V65|1|BB|A|515
4V65|1|BB|C|516
4V65|1|BB|C|517
4V65|1|BB|G|518

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L20

Chain BL

50S ribosomal protein L22

Chain BO

50S ribosomal protein L24

Chain BT

50S ribosomal protein L32

Chain BV

50S ribosomal protein L34