J3_4V65_023

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCCGGUGAUCUAGCCAUGG*UGUGGCUGGGGG*CAAUCAAACCGGG

Length

44 nucleotides

Bulged bases

4V65|1|BB|U|686, 4V65|1|BB|U|769, 4V65|1|BB|A|788, 4V65|1|BB|A|789, 4V65|1|BB|U|790, 4V65|1|BB|A|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|678
4V65|1|BB|C|679
4V65|1|BB|C|680
4V65|1|BB|G|681
4V65|1|BB|G|682
4V65|1|BB|U|683
4V65|1|BB|G|684
4V65|1|BB|A|685
4V65|1|BB|U|686
4V65|1|BB|C|687
4V65|1|BB|U|688
4V65|1|BB|A|689
4V65|1|BB|G|690
4V65|1|BB|C|691
4V65|1|BB|C|692
4V65|1|BB|A|693
4V65|1|BB|U|694
4V65|1|BB|G|695
4V65|1|BB|G|696
*
4V65|1|BB|U|767
4V65|1|BB|G|768
4V65|1|BB|U|769
4V65|1|BB|G|770
4V65|1|BB|G|771
4V65|1|BB|C|772
4V65|1|BB|U|773
4V65|1|BB|G|774
4V65|1|BB|G|775
4V65|1|BB|G|776
4V65|1|BB|G|777
4V65|1|BB|G|778
*
4V65|1|BB|C|787
4V65|1|BB|A|788
4V65|1|BB|A|789
4V65|1|BB|U|790
4V65|1|BB|C|791
4V65|1|BB|A|792
4V65|1|BB|A|793
4V65|1|BB|A|794
4V65|1|BB|C|795
4V65|1|BB|C|796
4V65|1|BB|G|797
4V65|1|BB|G|798
4V65|1|BB|G|799

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L4

Chain BN

50S ribosomal protein L2

Chain BV

50S ribosomal protein L34