J3_4V65_024

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUCGACCCCUAAG*CGAUGGGAAACAG*CUGUAC

Length

32 nucleotides

Bulged bases

4V65|1|BB|U|1344, 4V65|1|BB|A|1347, 4V65|1|BB|C|1348, 4V65|1|BB|U|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|1343
4V65|1|BB|U|1344
4V65|1|BB|C|1345
4V65|1|BB|G|1346
4V65|1|BB|A|1347
4V65|1|BB|C|1348
4V65|1|BB|C|1349
4V65|1|BB|C|1350
4V65|1|BB|C|1351
4V65|1|BB|U|1352
4V65|1|BB|A|1353
4V65|1|BB|A|1354
4V65|1|BB|G|1355
*
4V65|1|BB|C|1376
4V65|1|BB|G|1377
4V65|1|BB|A|1378
4V65|1|BB|U|1379
4V65|1|BB|G|1380
4V65|1|BB|G|1381
4V65|1|BB|G|1382
4V65|1|BB|A|1383
4V65|1|BB|A|1384
4V65|1|BB|A|1385
4V65|1|BB|C|1386
4V65|1|BB|A|1387
4V65|1|BB|G|1388
*
4V65|1|BB|C|1399
4V65|1|BB|U|1400
4V65|1|BB|G|1401
4V65|1|BB|U|1402
4V65|1|BB|A|1403
4V65|1|BB|C|1404

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L23

Chain BN

50S ribosomal protein L2

Chain BV

50S ribosomal protein L34