J3_4V65_027

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CACUGAAC*GUUCUAAC*GGACAGUG

Length

24 nucleotides

Bulged bases

4V65|1|BB|U|2092, 4V65|1|BB|A|2198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|2089
4V65|1|BB|A|2090
4V65|1|BB|C|2091
4V65|1|BB|U|2092
4V65|1|BB|G|2093
4V65|1|BB|A|2094
4V65|1|BB|A|2095
4V65|1|BB|C|2096
*
4V65|1|BB|G|2193
4V65|1|BB|U|2194
4V65|1|BB|U|2195
4V65|1|BB|C|2196
4V65|1|BB|U|2197
4V65|1|BB|A|2198
4V65|1|BB|A|2199
4V65|1|BB|C|2200
*
4V65|1|BB|G|2223
4V65|1|BB|G|2224
4V65|1|BB|A|2225
4V65|1|BB|C|2226
4V65|1|BB|A|2227
4V65|1|BB|G|2228
4V65|1|BB|U|2229
4V65|1|BB|G|2230

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain B4

50S ribosomal protein L9

Chain BN

50S ribosomal protein L2

Chain BS

50S ribosomal protein L31