J3_4V65_035

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGCAACUGUUUAUUAAAAACACAGCACU*GGUGUGAC*GUAAUGAUGG

Length

47 nucleotides

Bulged bases

4V65|1|BB|C|1774, 4V65|1|BB|U|1779, 4V65|1|BB|A|1780, 4V65|1|BB|U|1781, 4V65|1|BB|U|1782, 4V65|1|BB|A|1784, 4V65|1|BB|G|1792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|C|1768
4V65|1|BB|U|1769
4V65|1|BB|G|1770
4V65|1|BB|C|1771
4V65|1|BB|A|1772
4V65|1|BB|A|1773
4V65|1|BB|C|1774
4V65|1|BB|U|1775
4V65|1|BB|G|1776
4V65|1|BB|U|1777
4V65|1|BB|U|1778
4V65|1|BB|U|1779
4V65|1|BB|A|1780
4V65|1|BB|U|1781
4V65|1|BB|U|1782
4V65|1|BB|A|1783
4V65|1|BB|A|1784
4V65|1|BB|A|1785
4V65|1|BB|A|1786
4V65|1|BB|A|1787
4V65|1|BB|C|1788
4V65|1|BB|A|1789
4V65|1|BB|C|1790
4V65|1|BB|A|1791
4V65|1|BB|G|1792
4V65|1|BB|C|1793
4V65|1|BB|A|1794
4V65|1|BB|C|1795
4V65|1|BB|U|1796
*
4V65|1|BB|G|1823
4V65|1|BB|G|1824
4V65|1|BB|U|1825
4V65|1|BB|G|1826
4V65|1|BB|U|1827
4V65|1|BB|G|1828
4V65|1|BB|A|1829
4V65|1|BB|C|1830
*
4V65|1|BB|G|1975
4V65|1|BB|U|1976
4V65|1|BB|A|1977
4V65|1|BB|A|1978
4V65|1|BB|U|1979
4V65|1|BB|G|1980
4V65|1|BB|A|1981
4V65|1|BB|U|1982
4V65|1|BB|G|1983
4V65|1|BB|G|1984

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain BN

50S ribosomal protein L2

Chain BV

50S ribosomal protein L34