J3_4V65_037

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAACG*CGUUGAU*AAUGAAC

Length

19 nucleotides

Bulged bases

4V65|1|BB|U|2833, 4V65|1|BB|A|2835, 4V65|1|BB|U|2884, 4V65|1|BB|G|2885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V65|1|BB|G|2812
4V65|1|BB|A|2813
4V65|1|BB|A|2814
4V65|1|BB|C|2815
4V65|1|BB|G|2816
*
4V65|1|BB|C|2830
4V65|1|BB|G|2831
4V65|1|BB|U|2832
4V65|1|BB|U|2833
4V65|1|BB|G|2834
4V65|1|BB|A|2835
4V65|1|BB|U|2836
*
4V65|1|BB|A|2882
4V65|1|BB|A|2883
4V65|1|BB|U|2884
4V65|1|BB|G|2885
4V65|1|BB|A|2886
4V65|1|BB|A|2887
4V65|1|BB|C|2888

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L17

Chain BL

50S ribosomal protein L22

Chain BT

50S ribosomal protein L32

Chain BY

50S ribosomal protein L3