J3_4V66_026

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAUCCUGG*CAAGGGUAUGGC*GCCAUUUAAAG

Length

31 nucleotides

Bulged bases

4V66|1|BB|A|2518, 4V66|1|BB|U|2519, 4V66|1|BB|U|2522, 4V66|1|BB|G|2543, 4V66|1|BB|C|2559, 4V66|1|BB|U|2563

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V66|1|BB|C|2517
4V66|1|BB|A|2518
4V66|1|BB|U|2519
4V66|1|BB|C|2520
4V66|1|BB|C|2521
4V66|1|BB|U|2522
4V66|1|BB|G|2523
4V66|1|BB|G|2524
*
4V66|1|BB|C|2540
4V66|1|BB|A|2541
4V66|1|BB|A|2542
4V66|1|BB|G|2543
4V66|1|BB|G|2544
4V66|1|BB|G|2545
4V66|1|BB|U|2546
4V66|1|BB|A|2547
4V66|1|BB|U|2548
4V66|1|BB|G|2549
4V66|1|BB|G|2550
4V66|1|BB|C|2551
*
4V66|1|BB|G|2557
4V66|1|BB|C|2558
4V66|1|BB|C|2559
4V66|1|BB|A|2560
4V66|1|BB|U|2561
4V66|1|BB|U|2562
4V66|1|BB|U|2563
4V66|1|BB|A|2564
4V66|1|BB|A|2565
4V66|1|BB|A|2566
4V66|1|BB|G|2567

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L14

Chain BX

50S ribosomal protein L36