J3_4V66_033

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGCAACUGUUUAUUAAAAACACAGCACU*GGUGUGAC*GUAAUGAUGG

Length

47 nucleotides

Bulged bases

4V66|1|BB|C|1771, 4V66|1|BB|C|1774, 4V66|1|BB|U|1779, 4V66|1|BB|A|1780, 4V66|1|BB|U|1781, 4V66|1|BB|U|1782, 4V66|1|BB|A|1784, 4V66|1|BB|A|1786, 4V66|1|BB|C|1790

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V66|1|BB|C|1768
4V66|1|BB|U|1769
4V66|1|BB|G|1770
4V66|1|BB|C|1771
4V66|1|BB|A|1772
4V66|1|BB|A|1773
4V66|1|BB|C|1774
4V66|1|BB|U|1775
4V66|1|BB|G|1776
4V66|1|BB|U|1777
4V66|1|BB|U|1778
4V66|1|BB|U|1779
4V66|1|BB|A|1780
4V66|1|BB|U|1781
4V66|1|BB|U|1782
4V66|1|BB|A|1783
4V66|1|BB|A|1784
4V66|1|BB|A|1785
4V66|1|BB|A|1786
4V66|1|BB|A|1787
4V66|1|BB|C|1788
4V66|1|BB|A|1789
4V66|1|BB|C|1790
4V66|1|BB|A|1791
4V66|1|BB|G|1792
4V66|1|BB|C|1793
4V66|1|BB|A|1794
4V66|1|BB|C|1795
4V66|1|BB|U|1796
*
4V66|1|BB|G|1823
4V66|1|BB|G|1824
4V66|1|BB|U|1825
4V66|1|BB|G|1826
4V66|1|BB|U|1827
4V66|1|BB|G|1828
4V66|1|BB|A|1829
4V66|1|BB|C|1830
*
4V66|1|BB|G|1975
4V66|1|BB|U|1976
4V66|1|BB|A|1977
4V66|1|BB|A|1978
4V66|1|BB|U|1979
4V66|1|BB|G|1980
4V66|1|BB|A|1981
4V66|1|BB|U|1982
4V66|1|BB|G|1983
4V66|1|BB|G|1984

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain BN

50S ribosomal protein L2

Chain BV

50S ribosomal protein L34