J3_4V67_085

3D structure

PDB id

4V67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a translation termination complex formed with release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V67|1|DA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V67_085 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0784

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V67|1|DA|C|297
4V67|1|DA|G|298
4V67|1|DA|A|299
4V67|1|DA|A|300
4V67|1|DA|G|301
*
4V67|1|DA|C|316
4V67|1|DA|G|317
4V67|1|DA|C|318
4V67|1|DA|C|319
4V67|1|DA|A|320
4V67|1|DA|G|321
4V67|1|DA|A|322
4V67|1|DA|G|323
4V67|1|DA|A|324
4V67|1|DA|G|325
*
4V67|1|DA|C|337
4V67|1|DA|G|338
4V67|1|DA|U|339
4V67|1|DA|A|340
4V67|1|DA|G|341

Current chains

Chain DA

23S RRNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24