J3_4V68_001
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V68_001 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.1082
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V68|1|AA|G|46
4V68|1|AA|C|47
*
4V68|1|AA|G|361
4V68|1|AA|G|362
4V68|1|AA|A|363
4V68|1|AA|A|364
4V68|1|AA|U|365
4V68|1|AA|C|366
4V68|1|AA|U|367
*
4V68|1|AA|A|393
4V68|1|AA|G|394
4V68|1|AA|C|395
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain AP
- 30S ribosomal protein S16
- Chain AZ
- Elongation factor Tu-A
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