J3_4V68_020

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V68|1|BA|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V68_020 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0731

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V68|1|BA|C|1306
4V68|1|BA|A|1307
4V68|1|BA|A|1308
4V68|1|BA|G|1309
*
4V68|1|BA|C|1605
4V68|1|BA|G|1606
4V68|1|BA|C|1607
4V68|1|BA|A|1608
4V68|1|BA|A|1609
4V68|1|BA|A|1610
4V68|1|BA|C|1611
*
4V68|1|BA|G|1620
4V68|1|BA|U|1621
4V68|1|BA|G|1622

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34