3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V69_005 not in the Motif Atlas
Homologous match to J3_5J7L_005
Geometric discrepancy: 0.1613
The information below is about J3_5J7L_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4V69|1|AA|U|943
4V69|1|AA|G|944
4V69|1|AA|G|945
4V69|1|AA|A|946
*
4V69|1|AA|U|1235
4V69|1|AA|A|1236
4V69|1|AA|C|1237
*
4V69|1|AA|G|1337
4V69|1|AA|G|1338
4V69|1|AA|A|1339
4V69|1|AA|A|1340

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AI
30S ribosomal protein S9
Chain AM
30S ribosomal protein S13
Chain AV
Transfer RNA; tRNA
Chain AW
Transfer RNA; tRNA

Coloring options:


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